miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|124584115|gb|EH688394.1|EH688394 GCGGGGGAATGGTGAGGGCGATGAAGGTGGTGGGTTGCGGTCTCTCCATCCTCAACCCCATTTCTTCTTACAACATTCCT
TCATCACCATCATCGTCATCATCGTCGTCGTCTGATAATGCTTTGCCCTCTCTCCCATTTACAAAACGTAGGTCAATAAT
CTTCACTGCCTCAGTAGTAGCAGCTTCCTATCTTCAACTGTACCCAAAATCTCCATTTCAATCTGCAATCGCCCAACAAC
TGGATGAAATTCAGCTGGAAGAAGATCGTGTAGTTCGTCTGTTTGAGTTCTCGAGCAACATGCCGACGTACGATGCATCT
TTCCGTGATTTGGATTTCTGAAATTTAGATCCAATTTGTTTCAATTGAAACATCACCATCTGTGGTTTTCATTAAAGACC
TTGAAATCATCAATAACCCAAAAAACTCTGATGAGTTAGTAATGGTGGATGATGAGAAAGCAAAAGTTGAAGGGACAGGT
TCAGGCTTCATTTGGGATACATTTGGTCATATCGTGACAAATTATCATGTTGTTGAAAAGTTGGCTACAGATCAAAACGG
GAGACAACGTTGTAAGATATTCTTAGTTGACAAAAATGGCAACGGTTTTTCTAGAGATGGAAAGATTATTGGTGTTGACC
CATCTTGTGATCTGGCTGTTTTAAAGGTTGATGTTGAAGGGATTGAAATAAAGCCGGTAGATATTGGAAATGCTGGTAAA
CTAAACGTGGGACAAAGTTGTTATGCTATTGGGAATCCTTATGGATATGAGAATACATTAACCACTGGGGTAGTGAGTGG
GTTGGGAAGGGAGATACCATCACCAAATGGAGGTGCCATTAG




Most similar to sp|Q9SEL7|DEGP5_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic
           OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3
          Length = 323

 Score =  215 bits (548), Expect(2) = 2e-57
 Identities = 102/158 (64%), Positives = 125/158 (79%)
 Frame = +1

Query: 367 ETSPSVVFIKDLEIINNPKNSDELVMVDDEKAKVEGTGSGFIWDTFGHIVTNYHVVEKLA 546
           +TSPSVV+I+ +E+   PK S   ++ D+E  K+EGTGSGF+WD  GHIVTNYHV+ KLA
Sbjct: 97  KTSPSVVYIEAIEL---PKTSSGDILTDEENGKIEGTGSGFVWDKLGHIVTNYHVIAKLA 153

Query: 547 TDQNGRQRCKIFLVDKNGNGFSRDGKIIGVDPSCDLAVLKVDVEGIEIKPVDIGNAGKLN 726
           TDQ G QRCK+ LVD  G  FS++GKI+G+DP  DLAVLK++ EG E+ PV +G +  L 
Sbjct: 154 TDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPDNDLAVLKIETEGRELNPVVLGTSNDLR 213

Query: 727 VGQSCYAIGNPYGYENTLTTGVVSGLGREIPSPNGGAI 840
           VGQSC+AIGNPYGYENTLT GVVSGLGREIPSPNG +I
Sbjct: 214 VGQSCFAIGNPYGYENTLTIGVVSGLGREIPSPNGKSI 251



 Score = 28.9 bits (63), Expect(2) = 2e-57
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
 Frame = +3

Query: 144 KRRSIIFTASVVAASYL--QLYPKSPFQSAIA-----QQLDEIQLEEDRVVRLFEFSSNM 302
           +RR +IF +S+   S L      + P +SAIA     ++ +E++ EE+R V LF+ +S  
Sbjct: 42  RRRIMIFGSSLALTSSLLGSNQQRLPMESAIALEQFKEKEEELEEEEERNVNLFQKTSPS 101

Query: 303 PTY 311
             Y
Sbjct: 102 VVY 104


>sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic
           OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2
          Length = 439

 Score =  114 bits (286), Expect = 6e-25
 Identities = 63/156 (40%), Positives = 93/156 (59%)
 Frame = +1

Query: 367 ETSPSVVFIKDLEIINNPKNSDELVMVDDEKAKVEGTGSGFIWDTFGHIVTNYHVVEKLA 546
           E +PSVV+I +L +  +    D L +        +G+GSGF+WD  GHIVTNYHV+    
Sbjct: 127 ENTPSVVYITNLAVRQDAFTLDVLEVP-------QGSGSGFVWDKQGHIVTNYHVIR--- 176

Query: 547 TDQNGRQRCKIFLVDKNGNGFSRDGKIIGVDPSCDLAVLKVDVEGIEIKPVDIGNAGKLN 726
               G    ++ L D+     + D K++G D   D+AVL++D    +++P+ +G +  L 
Sbjct: 177 ----GASDLRVTLADQT----TFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLL 228

Query: 727 VGQSCYAIGNPYGYENTLTTGVVSGLGREIPSPNGG 834
           VGQ  +AIGNP+G ++TLTTGV+SGL REI S   G
Sbjct: 229 VGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATG 264